[1] Janes KA.An analysis of critical factors for quantitative immunoblotting. Sci Signal.2015;8(371):rs2.[2] Peach M,Marsh N,Miskiewicz EI,et al.Solubilization of proteins: the importance of lysis buffer choice. Methods Mol Biol. 2015;1312: 49-60.[3] Ngoka LC.Sample prep for proteomics of breast cancer: proteomics and gene ontology reveal dramatic differences in protein solubilization preferences of radioimmunoprecipitation assay and urea lysis buffers. Proteome Sci.2008;6:30.[4] Gozal YM, Dammer EB, Duong DM,et al. Proteomic analysis of hippocampal dentate granule cells in frontotemporal lobar degeneration: application of laser capture technology. Front Neurol. 2011;2:24.[5] Miskiewicz EI, MacPhee DJ. Lysis buffer choices are key considerations to ensure effective sample solubilization for protein electrophoresis. Methods Mol Biol.2019;1855:61-72.[6] Grabski AC. Advances in preparation of biological extracts for protein purification. Methods Enzymol.2009;463:285-303.[7] Peach M,Marsh N,Macphee DJ.Protein solubilization: attend to the choice of lysis buffer.Methods Mol Biol.2012;869:37-47. [8] Mansour AG,Khalil PA,Bejjani N,et al.An optimized xylene-free protein extraction method adapted to formalin-fixed paraffin embedded tissue sections for western blot analysis.Histol Histopathol.2017;32(3):307-313.[9] Luís IM,Alexandre BM,Oliveira MM,et al.Selection of an Appropriate Protein Extraction Method to Study the Phosphoproteome of Maize Photosynthetic Tissue. PLoS One.2016;11(10):e0164387. [10] Harfmann BD,Schroder EA,Esser KA.Circadian rhythms, the molecular clock, and skeletal muscle.J Biol Rhythms. 2015;30(2): 84-94. [11] Steidle-Kloc E,Schönfelder M,Müller E,et al.Does exercise training impact clock genes in patients with coronary artery disease and type 2 diabetes mellitus? Eur J Prev Cardiol. 2016;23(13): 1375-1382. [12] Madala SK,Sontake V,Edukulla R,et al.Unique and Redundant Functions of p70 Ribosomal S6 Kinase Isoforms Regulate Mesenchymal Cell Proliferation and Migration in Pulmonary Fibrosis.Am J Respir Cell Mol Biol. 2016;55(6):792-803.[13] Meng D,Frank AR,Jewell JL.mTOR signaling in stem and progenitor cells. Development.2018;145(1):pii: dev152595.[14] Kopec AM,Rivera PD,Lacagnina MJ,et al.Optimized solubilization of TRIzol-precipitated protein permits Western blotting analysis to maximize data available from brain tissue.J Neurosci Methods. 2017;280:64-76. [15] Gómez-Sánchez R,Pizarro-Estrella E,Yakhine-Diop SM,et al. Routine Western blot to check autophagic flux: cautions and recommendations. Anal Biochem.2015;477:13-20. [16] Ignatoski KM,Verderame MF.Lysis buffer composition dramatically affects extraction of phosphotyrosine-containing proteins. Biotechniques.1996;20(5):794-796. [17] Hnasko TS,Hnasko RM.The Western Blot. Methods Mol Biol. 2015; 1318:87-96. [18] Vallejo-Illarramendi A,Marciano DK,Reichardt LF.A novel method that improves sensitivity of protein detection in PAGE and Western blot.Electrophoresis.2013;34(8):1148-1150. [19] Krishnaswamy A,Barnes N,Lotlikar NP,et al. An Improved Method for Protein Extraction from Minuscule Quantities of Fungal Biomass.Indian J Microbiol (2018). https://doi.org/10.1007/ s12088-018-0752-y. [20] Santa C,Anjo SI,Manadas B. Protein precipitation of diluted samples in SDS-containing buffer with acetone leads to higher protein recovery and reproducibility in comparison with TCA/acetone approach. Proteomics.2016;16(13):1847-1851. [21] Rodríguez-Rigueiro T,Valladares-Ayerbes M,Haz-Conde M,et al.A novel procedure for protein extraction from formalin-fixed paraffin-embedded tissues. Proteomics. 2011;11(12):2555-2559. [22] Gromov P,Celis JE,Gromova I,et al.A single lysis solution for the analysis of tissue samples by different proteomic technologies.Mol Oncol.2008;2(4):368-379.[23] Yates LD,Greaser ML.Quantitative determination of myosin and actin in rabbit skeletal muscle.J Mol Biol.1983;168(1):123-141.[24] Wang J,Lee YM,Li C,et al.Dramatic improvement of proteomic analysis of zebrafish liver tumor by effective proteinextraction with sodium deoxycholate and heat denaturation.Int J Anal Chem. 2015; 2015:763969. [25] Evans K,Nasim Z,Brown J,et al.Inhibition of SNAT2 by metabolic acidosis enhances proteolysis in skeletal muscle.J Am Soc Nephrol. 2008;19(11):2119-2129. [26] Patel S.Stressor-driven extracellular acidosis as tumor inducer via aberrant enzyme activation: A review on the mechanisms and possible prophylaxis. Gene. 2017;626:209-214. [27] Sood S,Chen Y,McIntire K,et al. Acute acidosis attenuates leucine stimulated signal transduction and protein synthesis in rat skeletal muscle.Am J Nephrol.2014;40(4):362-370. [28] Aoyama S,Shibata S.The Role of Circadian Rhythms in Muscular and Osseous Physiology and Their Regulation by Nutrition and Exercise. Front Neurosci.2017;11:63. [29] Liu Y,Yuan J,Xiang L,et al.A high sucrose and high fat diet induced the development of insulin resistance in the skeletal muscle of Bama miniature pigs through the Akt/GLUT4 pathway.Exp Anim. 2017;66(4):387-395. [30] Bi Y,Sun WP,Chen X,et al.Effects of early insulin therapy on nuclear factor kappaB pathway in skeletal muscle of diabetes: experiment with rats.Zhonghua Yi Xue Za Zhi.2008;88(46):3287-3292.[31] Wang XH, Mitch WE. Muscle wasting from kidney failure-a model for catabolic conditions.Int J Biochem Cell Biol. 2013;45(10): 2230-2238.[32] Garofalo RS,Orena SJ,Rafidi K,et al.Severe diabetes, age-dependent loss of adipose tissue, and mild growth deficiency in mice lacking Akt2/PKB beta.J Clin Invest.2003;112(2):197-208. [33] Huang S,Czech MP.The GLUT4 glucose transporter.Cell Metab. 2007;5(4):237-252.[34] Carnagarin R,Dharmarajan AM,Dass CR.Molecular aspects of glucose homeostasis in skeletal muscle--A focus on the molecular mechanisms of insulin resistance. Mol Cell Endocrinol. 2015;417: 52-62.[35] Xiao Y,Sharma N,Arias EB,et al.A persistent increase in insulin-stimulated glucose uptake by both fast-twitch and slow-twitchskeletal muscles after a single exercise session by old rats.Age (Dordr).2013;35(3):573-582.[36] Czech MP. Insulin action and resistance in obesity and type 2 diabetes. Nat Med,2017,23(7):804-814. [37] Mitsuhashi K,Senmaru T,Fukuda T,et al.Testosterone stimulates glucose uptake and GLUT4 translocation through LKB1/AMPK signaling in 3T3-L1 adipocytes. Endocrine. 2016;51(1):174-184.[38] Meyuhas O.Physiological roles of ribosomal protein S6: one of its kind.Int Rev Cell Mol Biol.2008;268:1-37. |