中国组织工程研究 ›› 2013, Vol. 17 ›› Issue (7): 1251-1258.doi: 10.3969/j.issn.2095-4344.2013.07.020

• 组织构建细胞学实验 cytology experiments in tissue construction • 上一篇    下一篇

提高SAF基因启动子区DNA模板聚合酶链式反应的扩增效率

曹锡梅1,梁俊红2,张 潮2,万东方2,蒙晓平2,郭大玮2   

  1. 1山西医科大学组织学与胚胎学教研室,山西省太原市 030001
    2山西医科大学法医学院,山西省太原市 030001
  • 收稿日期:2012-07-24 修回日期:2012-08-27 出版日期:2013-02-12 发布日期:2013-02-12
  • 通讯作者: 郭大玮,博士,教授,博士生导师,山西医科大学法医学院,山西省太原市 030001 guo8dawei@yahoo.com.cn
  • 作者简介:曹锡梅★,女,1977年生,江苏省无锡市人,汉族,2003年山西医科大学毕业,硕士,讲师,主要从事发育生物学和真核生物基因转录调控方面的研究。 caoximei@163.com

Improving PCR efficiency in the promoter region of serum amyloid A-activating transcription factor

Cao Xi-mei1, Liang Jun-hong2, Zhang Chao2, Wan Dong-fang2, Meng Xiao-ping2, Guo Da-wei2   

  1. 1 Department of Histology and Embryology, Shanxi Medical University, Taiyuan 030001, Shanxi Province, China
    2 School of Forensic Medicine, Shanxi Medical University, Taiyuan 030001, Shanxi Province, China
  • Received:2012-07-24 Revised:2012-08-27 Online:2013-02-12 Published:2013-02-12
  • Contact: Guo Da-wei, Doctor, Professor, Doctoral supervisor, School of Forensic Medicine, Shanxi Medical University, Taiyuan 030001, Shanxi Province, China guo8dawei@yahoo.com.cn
  • About author:Cao Xi-mei★, Master, Lecturer, Department of Histology and Embryology, Shanxi Medical University, Taiyuan 030001, Shanxi Province, China caoximei@163.com

摘要:

背景:血清淀粉样蛋白A转录激活因子基因启动子区鸟嘌呤和胞嘧啶的含量偏高,常规聚合酶链式反应扩增不易成功。
目的:探索提高血清淀粉样蛋白A转录激活因子基因启动子区富含鸟嘌呤和胞嘧啶的DNA模板聚合酶链式反应扩增方案及优化的扩增体系。
方法:提取THP-1细胞基因组DNA作为模板,通过97 ℃高温预变性及最佳退火温度的探索优化聚合酶链式反应的反应条件,在聚合酶链式反应扩增体系中添加不同浓度的增强剂二甲基亚砜改善反应体系。建立提高血清淀粉样蛋白A 转录激活因子基因富含鸟嘌呤和胞嘧啶的启动子区聚合酶链式反应扩增效率的方法,同时评估不同浓度二甲基亚砜对聚合酶链式反应扩增结果的影响。
结果与结论:97 ℃高温预变性使模板DNA充分解链,同时提高退火温度至60 ℃,有利于提高聚合酶链式反应扩增产率;反应体系中添加2%二甲基亚砜可以提高血清淀粉样蛋白A转录激活因子基因启动子区聚合酶链式反应产物的特异性和产率,但是鸟嘌呤和胞嘧啶含量不同对增强剂的依赖不一样。结果证实,高温预变性和较高的退火温度可以保证充分解链的模板DNA与引物特异性结合,但是DNA模板鸟嘌呤和胞嘧啶含量的不同对增强剂二甲基亚砜的依赖有差异。

关键词: 组织构建, 组织构建细胞学实验, 组织工程基础实验, 血清淀粉样蛋白A转录激活因子, DNA, 启动子区, 鸟嘌呤, 胞嘧啶, 二甲基亚砜, 高温预变性, 退火温度, 聚合酶链式反应, 扩增效率, 国家自然科学基金, 组织构建图片文章

Abstract:

BACKGROUND: Higher levels of guanine and cytosine in the promoter region of serum amyloid A-activating transcription factor are apt to cause unsuccessful PCR reactions.
OBJECTIVE: To optimize the conditions and amplification system for PCR amplification in the promoter region of serum amyloid A-activating transcription factor with rich guanine and cytosine.
METHODS: THP-1 cell genomic DNA was extracted as a template, to optimize amplification conditions through 97 ℃ denaturation and the best annealing temperature. In addition, different concentrations of dimethyl sulfoxide as an enhancer were added to improve the PCR amplification system. The method of promoting PCR efficiency in the promoter region of serum amyloid A-activating transcription factor with rich guanine and cytosine was established, and meanwhile, the effects of different-concentration dimethyl sulfoxide on PCR results were assessed.
RESULTS AND CONCLUSION: During the PCR cycling, the denaturing temperature of 97℃ at which template DNA unlocked the double-stranded and the annealing temperature increased to 60℃ were critical for PCR amplification specificity and efficiency. The use of 2% dimethyl sulfoxide was shown to improve the yield and specificity of PCR products in the promoter region of serum amyloid A-activating transcription factor. However, templates with different guanine and cytosine content had different dependence on the enhancer. It has been aproved that, during the PCR cycling, high denaturing temperature and high annealing temperature at which the primers bind to their specific template DNA unlocking the double-stranded are critical for specificity and efficiency of the PCR amplification. Templates with different guanine and cytosine contents, however, depend on dimethyl sulfoxide in different manners.

Key words: tissue construction, cytology experiments in tissue construction, basic experiments in tissue engineering, serum amyloid A-activating transcription factor, DNA, promoter region, guanine, cytosine, dimethyl sulfoxide, heat denaturation, annealing temperature, polymerase chain reaction, amplification efficiency, the National Natural Science Foundation of China, tissue construction photographs-containing paper

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