Chinese Journal of Tissue Engineering Research ›› 2026, Vol. 30 ›› Issue (28): 7447-7455.doi: 10.12307/2026.830
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Yan Yuge1, Wang Yanxi1, Qi Xiang2, Cao Shan3, Zou Xiaoyan1, Liu Yujuan2
Received:2025-10-15
Revised:2025-12-27
Online:2026-10-08
Published:2026-02-26
Contact:
Wang Yanxi, PhD, Lecturer, School of Nursing, Henan University of Chinese Medicine, Zhengzhou 450046, Henan Province, China
About author:Yan Yuge, MS candidate, School of Nursing, Henan University of Chinese Medicine, Zhengzhou 450046, Henan Province, China
Supported by:CLC Number:
Yan Yuge, Wang Yanxi, Qi Xiang, Cao Shan, Zou Xiaoyan, Liu Yujuan. Screening biomarkers for premature ovarian insufficiency based on cellular senescence and endoplasmic reticulum stress with experimental validation[J]. Chinese Journal of Tissue Engineering Research, 2026, 30(28): 7447-7455.
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2.1 差异基因的筛选与加权基因共表达网络分析 使用“limma”包分析GSE201276数据集早发性卵巢功能不全疾病组与对照组的RNA-seq数据,共鉴定出1 766个差异基因,其中1 535个表达上调,231个表达下调(图1A,B)。采用加权基因共表达网络分析对GSE201276数据集基因与疾病的相关性开展分析,样本聚类后剔除2个离群样本(图1C)。为满足无尺度网络分布前提条件,将软阈值设置为6,最终鉴定出18个目标模块(图1D,E)。通过构建热图将各模块与早发性卵巢功能不全的相关性进行可视化,结果显示棕褐色模块(r=±0.87,P=0.000 2)和黄色模块(r=±0.71,P=0.03)共572个与疾病相关的关键基因(图1F)。 2.2 共识聚类分析 将模块基因与细胞衰老、内质网应激特征基因及差异基因取交集,共获得6个关键基因(图2A,B),分别为WEE1 G2检查点激酶(WEE1 G2 checkpoint kinase,WEE1)、 HtrA 丝氨酸肽酶1(HtrA serine peptidase 1,HTRA1)、蛋白磷酸酶1调节亚基13B(Protein phosphatase 1 regulatory subunit 13B,PPP1R13B)、叉头框蛋白O1(Forkhead box O1,FOXO1)、AKT丝氨酸/苏氨酸激酶3(AKT serine/threonine kinase 3,AKT3)和DNA损伤诱导转录本4(DNA damage inducible transcript 4,DDIT4)。 基于6个交集基因使用共识聚类算法进行无监督聚类分析,以识别与早发性卵巢功能不全发病相关的亚型差异基因。结合累积分布函数图确定聚类簇k的值为6(图2C),根据此次研究选取k=2作为聚类结果(图2D)。结合共识矩阵的热图发现,k=2时具有清晰明确的分类边界,基于此将数据集中6个疾病组基因分为A、B两个亚型(图2E)。进一步对A、B两个亚型进行差异分析,最终获取911个基于细胞衰老–内质网应激特征基因交集所定义的亚型差异表达基因(图2F)。 2.3 亚型差异表达基因的免疫浸润分析 免疫细胞丰度堆叠图中展示了22种免疫细胞的浸润比例,见图3A。免疫浸润组间差异箱线图结果显示,早发性卵巢功能不全组和对照组之"
间有2种免疫细胞存在差异,分别为M1型巨噬细胞和静息树突状细胞。与对照组相比,这两种免疫细胞在疾病组浸润水平显著升高(P < 0.05),见图3B,提示这两种免疫细胞参与早发性卵巢功能不全的发病过程。 2.4 亚型差异表达基因富集分析 为分析疾病组与对照组之间的生物学功能差异,对亚型差异表达基因进行基因本体论、京都基因与基因组百科全书富集分析及基因集富集分析。结果显示,早发性卵巢功能不全发病涉及细胞周期负调控、减数分裂、雌性生殖腺发育等生物学过程,与卵母细胞减数分裂、孕激素介导卵母细胞成熟以及转化生长因子β等信号通路相关(图4A,B)。基因集富集分析结果显示,早发性卵巢功能不全发病与细胞有丝分裂、细胞周期相关通路的表达上调有关(图4C)。蛋白-蛋白互作网络分析结果共有879个节点,671条边,形成了一个由细胞衰老特征基因、内质网应激特征基因和早发性卵巢功能不全疾病靶基因构成的交互网络,细胞周期蛋白依赖性激酶1(Cyclin dependent kinase 1,CDK1)、细胞周期蛋白B1(Cyclin B1,CCNB1)和BUB1有丝分裂检查点丝氨酸/苏氨酸激酶(BUB1 mitotic checkpoint serine/threonine kinase,BUB1)等处于网络核心,提示基于细胞衰老-内质网应激可多靶点干预早发性卵巢功能不全(图4D)。应用cyto-hubba插件中最大团中心性算法筛选出得分最高的前60个基因(图4E)。 2.5 机器学习算法筛选潜在生物标志物及诊断模型的构建与验证 采用广义线性模型识别出10个特征基因,神经网络算法筛选出20个特征基因(图5A,B)。将两种机器学习算法的结果取交集得到4个关键基因,分别为细胞周期蛋白B2(Cyclin B2,CCNB2)、肌动蛋白结合蛋白(Anillin actin binding protein,ANLN)、极光激酶A(Aurora kinase A,AURKA)和BUB1有丝分裂检查点丝氨酸/苏氨酸激酶(图5C),以此构建列线图模型,计算早发性卵巢功能不全患者的患病风险概率。结果显示,极光激酶A和肌动蛋白结合蛋白两个基因具有良好的诊断性能(图5D)。校准曲线结果显示,实际患病风险与模型预测风险之间差异较小,说明该模型对早发性卵巢功能不全发病具有较好的预测能力(图5E)。测试集受试者工作特征曲线显示,极光激酶A和肌动蛋白结合蛋白的曲线下面积值均大于0.8(图5F)。验证集受试者工作特征曲线结果显示,肌动蛋白结合蛋白的曲线下面积值为0.667,极光激酶A的曲线下面积值为0.556,进一步证明极光激酶A和肌动蛋白结合蛋白对早发性卵巢功能不全具有较好的诊断价值(图5G,H)。 2.6 潜在生物标志物的验证与相关性分析 研究结果显示,早发性卵巢功能不全潜在生物标志物极光激酶A和肌动蛋白结合蛋白在早发性卵巢功能不全疾病组表达水平降低(P < 0.05)(图6A,B)。为进一步了解2个关键基因与细胞衰老-内质网应激特征基因之间表达的关联情况,此次研究进一步开展了相关性分析。结果显示,极光激酶A与HtrA丝氨酸肽酶1(r=0.77,P < 0.01)、蛋白磷酸酶1调节亚基13B(r=0.69,"
P=0.02)、叉头框蛋白O1(r=0.73,P=0.01)、DNA损伤诱导转录本4(r=0.83,P < 0.01)的表达呈正相关关系,肌动蛋白结合蛋白与WEE1 G2检查点激酶(r=0.69,P=0.02)、HtrA丝氨酸肽酶1(r=0.67,P=0.02)、蛋白磷酸酶1调节亚基13B(r=0.66,P=0.03)、叉头框蛋白O1(r=0.63,P=0.04)、DNA损伤诱导转录本4(r=0.63,P=0.04)的表达呈正相关关系,极光激酶A、肌动蛋白结合蛋白之间的表达水平也呈正相关关系(r=0.85,P < 0.01),见图6C。这些基因整体呈正相关性,表明它们之间可能存在正向相互作用。极光激酶A、肌动蛋白结合蛋白的染色体分布情况见图6D。 2.7 两组小鼠动情周期变化及卵巢组织形态比较 为进一步验证潜在生物标志物的表达情况,此次研究应用环磷酰胺构建早发性卵巢功能不全小鼠模型,用以检测所筛选潜在生物标志物的表达水平。动物实验研究期间,两组动物均无脱失。阴道脱落细胞涂片结果显示,空白组小鼠动情周期以四五天为1个周期,呈现出正常的规律性。而模型组小鼠在腹腔注射4次环磷酰胺后出现动情周期延长、停滞、无周期等紊乱现象,异常率为100%(图7A,B)。小鼠卵巢组织苏木精-伊红染色结果显示,空白组小鼠卵巢组织结构完整,各级卵泡均可见,窦卵泡数较多。与空白组相比,模型组小鼠卵巢萎缩明显,初级卵泡、次级卵泡及窦卵泡数量明显减少,闭锁卵泡数增加,差异有显著性意义(P < 0.05)(图7C,D)。 2.8 两组小鼠血清促卵泡生成素和抗穆勒氏管激素水平比较 应用 ELISA法检测两组小鼠血清性激素水平,模型组小鼠血清促卵泡生成素水平显著高于对照组,差异有显著性意义(P < 0.01);模型组小鼠血清抗穆勒氏管激素水平较空白组降低,差异有显著性意义(P < 0.01)。结合2.7部分实验结果,提示早发性卵巢功能不"
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