Design
A gene experiment.
Time and setting
The experiment was completed in the Life Science College of Xinxiang Medical University, China from November 2011 to August 2013.
Materials
Escherichia coli DH5α are kept in Stem Cells and Biological Treatment Center at Xinxiang Medical University, China. Fresh anticoagulant blood samples are donated from a volunteer in this project group. This volunteer is a 30-year-old male, with no disease previously. There was no disease detected by physical examination. We have informed the donor of the purpose, significance and possible discomfort of this experiment, and have got the permission of this volunteer, who signed the informed consent.
Vector
pIRES2-EGFP plasmid was purchased from Beijing TianDz Inc. pIRES2-VEGF165-EGFP plasmid are preserved in Stem Cells and Biological Treatment Center at Xinxiang Medical University in China.
Cells
HEK293 cells are kept in Stem Cells and Biological Treatment Center at Xinxiang Medical University in China.
Methods
Design of the primers
GDNF (NM_000514.3) and VEGF165 gene sequence (NM-001025368.2) in Gene Bank served as the template and was used to design the primers. Overlap-PCR, an efficient and rapid method, was used to clone human GDNF gene CDS (coding sequence) from genomic DNA. The procedure included four primers and three-step PCRs. The Coding Sequence of human GDNF gene fragment includes two exons (exon1 + exon2). Two primer pairs (forward-primer and reverse-primer) were designed to amplify GDNF-1 (exon1), Bgl II restriction enzyme cut site was added in forward-primer which is the outermost primers in the upstream. Other two primer pairs (forward-primer and reverse-primer) were designed to amplify the exon2 (GDNF-2). SmalI restriction enzyme cut site was added in reverse-primer which is the outermost primers in the downstream. The length of amplified fragment was 636 bp.
Two primer pairs were designed to amplify the human VEGF165 from the pIRES2-VEGF165-EGFP. Forward-long primer was 4 bases longer than forward-short at the 5’ end, so did primer reverse-long than reverse-short. The forward primers were introduced parts of sequence of Bst XI site, and in reverse primers of Not I site, which will be used to assemble the Bst XI and Not I sticky ends. The length of amplified fragment was 576 bp.
Construction of pIRES2-GDNF-EGFP
The genomic DNA of human peripheral blood mononuclear cells severed as the template and the primer of GDNF was used to amplify GDNF gene. In this study, Overlap-PCR, an efficient and rapid method, was used to clone human GDNF gene CDS (coding sequence) from genomic DNA. The procedure included four primers and three-step PCRs. Human GDNF gene consists of two exons and the CDS contains 636 bp. In the first step three PCRs were performed to generate extended exon1 (GDNF-1), exon2 (GDNF-2) that contained overlapped nucleotides and were used as the templates for second ligation PCR. Two primer pairs were designed to amplify exon1 (GDNF-1). Other two primer pairs were designed to amplify the exon2 (GDNF-2). Secondly, exon1 (GDNF-1) and exon2 (GDNF-2) were spliced together. Lastly, the two exons (GDNF-1 and GDNF-2) were linked together with outermost primers and the templates from the second step. As an efficient and rapid method, overlap-PCR is feasible and acceptable for gene cloning from genomic DNA.
The genomic DNA of human peripheral blood mononuclear cells severed as the template and the primer of GDNF was used to amplify GDNF gene. A total of 20 μL PCR reaction system was added, including genomic DNA 0.5 μL (10 ng), 2 × Prime STAR Max DNA Polymerase
10 μL, RNase-Free Water 7.5 μL, upstream primer and downstream primer 2 μL. The reaction conditions were: 95℃ for 5 minutes, 98 ℃ for 10 seconds, 55 ℃ for
5 seconds, and 72 ℃ for 55 seconds, 30 cycles; finally, maintained at 72 ℃ for 5 minutes. PCR product was purified by the PCR Purification Kit, then the PCR product and plasmid pIRES2-EGFP was cut by Bgl II and Sma I. After digestion, PCR product was purified by the PCR Purification Kit. The DNA fragment was inserted into the plasmid by T4 DNA ligase, 20 μL system was added, including pIRES2-EGFP 2 μL, cDNA (GDNF) 8 μL, T4 DNA ligase 0.2 μL, at 22 ℃ for 30 minutes. The DNA fragment was translated into Escherichia coli DH5α and placed on LB plate (kanr) at 37 ℃ incubator for 16 hours. Monoclonal colony was picked up and shaken for 12-16 hours at 37 ℃ with a speed of 225 r/minute. The plasmid was extracted and identified by using Bgl II and Bam HI double enzyme digestion. The recombinant plasmid pIRES2-GDNF-EGFP was obtained.
PCR amplification of VEGF165
Two parallel PCRs were set up using forward-long/ forward-short or reverse-long/reverse-short primer pairs, with the pIRES2-VEGF165-EGFP plasmid by as templates. Both amplifications were subjected to 30 cycles of 94 ℃ for 30 seconds, 54 ℃ for 30 seconds and 72 ℃ for
1 minute, followed by a 5 minute extension at 72 ℃ using Prime STAR Max DNA Polymerase. Another two parallel PCRs were performed using EXTaq DNA polymerase. The expected DNA fragments in the four PCR products were puri?ed separately using DNA gel extraction kit and quanti?ed by Nano Drop 2000 UV-Vis Spectrophotometers.
Construction of pIRES2-GDNF/VEGF165
PIRES2-GDNF-EGFP was digested with Bst XI and Not I, followed by phenol: chloroform extraction and ethanol precipitation. Meanwhile, each pooled VEGF165 PCR products ampli?ed with Prime STAR Max DNA Polymerase were mixed, denatured at 94 ℃ for
4 minutes and re-annealed at 65 ℃ for 2 minutes. For a ligation reaction, the annealed VEGF165 and linearized pIRES2-GDNF-EGFP (molar ratio equal to 4:1) were incubated with T4 DNA ligase at 16 ℃ for 3 hours. The two ligation products were used to transform Escherichia coli DH5a CaCl2 competent cells following standard method. Screening of the transformants was performed by Bst XI plus Not I digestion following alkalinelysis plasmid preparation, and the recombinants were con?rmed by DNA sequencing.
Two parallel PCRs were set up using either forward-long/reverse-long (PCR products A) or forward-short/reverse-short primer pairs (PCR products B), with the pIRES2-VEGF165-EGFP plasmid (double ring means this plasmid in this figure) by as templates. Equimolar of the two PCR products A and B were mixed, heat denatured and re-annealed to generate hybridized DNA fragments. Four types of double-stranded DNA molecules with equal proportions are generated via random complementary pairing. They are molecule I, II, III and IV. Two of them, I and II, are blunt-ended and another two are sticky-ended. The molecule III possess a 5’ Bst XI sticky end and a 3’ Not I sticky end, which allow the fragment to be cloned directionally into pIRES2-BDNF-EGFP digested with Bst XI and Not I.
In vitro transduction of HEK293 cells
HEK293 cells were maintained in Dulbecco’s modified Essential Medium (DMEM) containing 10% newborn bovine serum and 100 mg/L penicillin/streptomycin. Cells were maintained in a humidified environment at 37 ℃ and 5% CO2. Cell viability was monitored with trypan blue exclusion method. The viability was over 95% in all experiments. Cells were seeded at a density of 5 × 105 cells/well in a six-well tissue culture plate and cultured for 24 hours to 60%-80% confluence. HEK293 cells were either mock infected or infected with the pIRES2-EGFP, pIRES2-GDNF/EGFP and pIRES2-GDNF/VEGF165 three vectors using LipofectamineTM 2000 respectively for
2 hours at 37 ℃ at 5 μg per well. Two hours later, the transfection medium was removed, and fresh complete growth medium was added. Twenty-four hours post-transfection, they were observed under the inverted fluorescent microscope. The expression of the BDNF and NT-3 gene was detected by RT-PCR and western blot analysis 3 days later.
RT-PCR detection of the expression of GDNF and VEGF165 in HEK293 cells
To detect the GDNF and VEGF165 mRNA expression levels in HEK293 cells which were either mock infected or infected with the pIRES2-EGFP, pIRES2-GDNF/EGFP and pIRES2-GDNF/VEGF165 respectively, the GDNF and VEGF165 expression was primarily assessed by means of RT-PCR. The collected cells were added per 1 mL TRIZOL reagent and pipetting repeatedly, total cellular RNA was extracted in accordance with the instruction of manual steps. Then the extracted total RNA was transcribed and reversed into cDNA. Then the reverse transcription of the cDNA was amplified with the PCR, and the reaction conditions were pre-denaturation under 94 ℃ for 5 minutes; 94 ℃ for 30 seconds, 55 ℃ for
30 seconds, 72 ℃ for 30 seconds, 35 cycles, followed by
72 ℃ extension for 10 minutes. 5 μL of PCR amplification product was added with 1 μL loading buffer, placed in
20 g/L agarose gel electrophoresis at 100 V. Subsequently the cells were observed with gel imaging system, and the absorbance value of each band was analyzed.
Western blot analysis of the expression of GDNF and VEGF165 in HEK293 cells
A standard western blot protocol was used to detect BDNF and NT-3 protein expression in HEK293 cells which were either mock infected or infected with the pIRES2-EGFP, pIRES2-GDNF/EGFP and pIRES2-GDNF/VEGF165 vectors respectively. We collected the culture supernatants of infected HEK293 cells without serums for western blot analysis, which was assayed using an anti-GDNF and anti-NT-3 antibody. The 20 μg protein extracted from the culture supernatants of transduced HEK293 cells was separated on SDS-PAGE under reducing and denaturing conditions, and transferred to polyvinylidene difluo-ride (PVDF) membrane. The membranes were incubated in a 1:500 dilution of polyclonal rabbit anti-GDNF antibody (Santa Cruz Biotechnology, USA) or 1:250 dilution of polyclonal rabbit anti-VEGF165 antibody (Santa Cruz Biotechnology), polyclonal rabbit anti-β-actin (1:500, Santa-Cruz Biotechnology) was used as the loading control. After washing with TBS for three times (10 minutes per time), cells were incubated with horseradish peroxidase conjugated goat anti-rabbit lgG (1:5 000) at room temperature for 2 hours. After TBS washing (3 times, for 15 minutes each), X-ray film was performed to observe the final results. The amount of signal was quantified with Gel-Pro analyzer software.
Main outcome measures
Expressions of GDNF and VEGF165 mRNA and protein were detected by RT-PCR and western blot assay.
Statistical analysis
We using SPSS 13.0 statistical software on experimental data for statistical processing, the data are described in mean±SD, data comparisons between groups were tested by one-way analysis of variance. A P < 0.05 was considered statistically significant difference.