中国组织工程研究 ›› 2026, Vol. 30 ›› Issue (33): 8822-8828.doi: 10.12307/2026.378

• 组织工程相关大数据分析 Big data analysis in tissue engineering • 上一篇    下一篇

种植体周围炎与结核病的关联:GEO数据库、GWAS数据库样本分析

牟文博1,王  妍1,程  瑶2   

  1. 1哈尔滨市口腔医院修复科,黑龙江省哈尔滨市   150090;2北大荒集团总医院检验科,黑龙江省哈尔滨市   150088

  • 收稿日期:2025-06-06 修回日期:2025-09-18 出版日期:2026-11-28 发布日期:2026-06-18
  • 通讯作者: 程瑶,硕士,主管技师,北大荒集团总医院检验科,黑龙江省哈尔滨市 150088
  • 作者简介:牟文博,男,1995年生,黑龙江省齐齐哈尔市人,汉族,硕士,主治医师,主要从事口腔修复研究。

Association between peri-implantitis and tuberculosis: sample analysis based on GEO and GWAS databases

Mu Wenbo1, Wang Yan1, Cheng Yao2   

  1. 1Department of Prosthodontics, Harbin Stomatological Hospital, Harbin 150090, Heilongjiang Province, China; 2Department of Laboratory Medicine, Beidahuang Group General Hospital, Harbin 150088, Heilongjiang Province, China
  • Received:2025-06-06 Revised:2025-09-18 Online:2026-11-28 Published:2026-06-18
  • Contact: Cheng Yao, MS, Chief technician, Department of Laboratory Medicine, Beidahuang Group General Hospital, Harbin 150088, Heilongjiang Province, China
  • About author:Mu Wenbo, MS, Attending physician, Department of Prosthodontics, Harbin Stomatological Hospital, Harbin 150090, Heilongjiang Province, China

摘要:



文题释义:
孟德尔随机化:是流行病学研究中评估病因推断的数据分析分法,将遗传变异作为工具变量以评估暴露因素与结局因素之间的因果关系。
种植体周围炎:是一种发生在种植体周围组织的炎症性疾病。种植体周围炎通常是由于口腔卫生不良导致菌斑、牙石等在种植体周围积聚,促使种植体周围的软组织和骨组织被破坏,严重时可导致种植体脱落。

背景:研究显示种植体周围炎与结核病之间存在相关性,但具体的因果关系和免疫学机制尚不明确。
目的:采用孟德尔随机化和生物信息学方法探索种植体周围炎与结核病的关联。
方法:①从GEO数据库(由美国国立生物技术信息中心开发,收集了全球范围内的高通量基因表达数据、芯片数据、测序数据等,为生物医学研究提供了丰富的资源,为开放数据库)获取4组种植体周围炎的表达谱数据(研究已获得相关机构审查委员会批准),批次矫正后进行差异分析、GO富集分析和KEGG富集分析。②提取种植体周围炎KEGG富集分析通路结果中最显著的通路作为研究暴露因素,从GWAS数据库(由英国布里斯托大学的MRC综合流行病学中心开发,整合了来自UK Biobank、FinnGen等大型队列的GWAS汇总数据,涵盖众多人类表型和疾病结局相关数据,为开放数据库)获取结核病与种植体周围炎数据(研究已获得相关机构审查委员会批准)作为结局因素,进行孟德尔随机化分析,使用逆方差加权法、MR-Egger回归法、加权中位数法、简单模式和加权模式评估种植体周围炎和结核病的因果关系。异质性分析、水平多效应检验和留一法敏感性分析评估孟德尔随机化分析结果的可靠性。③通过免疫细胞浸润分析探究结核病通路基因与免疫细胞之间的相关性,通过验证组差异分析验证通路基因的表达差异性。
结果与结论:①GO富集分析显示,种植体周围炎主要与白细胞介导免疫、淋巴细胞介导免疫、单核细胞增殖的调控和吞噬作用等生物学功能显著相关;KEGG富集分析显示,种植体周围炎主要与结核病、吞噬体、细胞因子-细胞因子受体相互作用、金黄色葡萄球菌感染、酒精性肝病、冠状病毒COVID-19等相关,其中最显著通路为结核病。②孟德尔随机化分析结果显示,当结核病被视为暴露因素时,结核病与种植体周围炎之间存在显著的正相关关系(逆方差加权法:OR=1.490,95%CI=1.218-1.823,P < 0.001),加权中位数法结果与逆方差加权法结果一致。异质性分析显示不存在异质性,水平多效性检验显示该研究不存在水平多效性,留一法敏感性分析显示单独去除某个单核苷酸多态性不会对孟德尔随机化结果产生影响。③免疫细胞相关性分析显示,结核病可能通过免疫抑制作用和促牙槽骨吸收作用增加种植体周围炎的发病风险。④结核病与种植体周围炎存在因果关联,结核病可能会增加种植体周围炎的发病风险。该研究为中国口腔种植领域疾病防治提供了新的理论视角,有望推动临床工作中针对结核病患者种植治疗风险评估体系的完善,为降低种植体周围炎发生率、优化治疗策略提供重要参考。 
https://orcid.org/0009-0000-7177-7560 (牟文博)


中国组织工程研究杂志出版内容重点:干细胞;骨髓干细胞;造血干细胞;脂肪干细胞;肿瘤干细胞;胚胎干细胞;脐带脐血干细胞;干细胞诱导;干细胞分化;组织工程

关键词: 种植体周围炎, 结核病, 孟德尔随机化, 生物信息学, 免疫细胞, 口腔种植

Abstract: BACKGROUND: There is a correlation between peri-implantitis and tuberculosis, but the specific causal relationship and immunological mechanisms remain unclear.
OBJECTIVE: To explore the association between peri-implantitis and tuberculosis using Mendelian randomization and bioinformatics methods.
METHODS: (1) Four groups of expression profile data of peri-implantitis (the study has been approved by the relevant institutional review board) were obtained from the Gene Expression Omnibus (GEO) database (an open database developed by the National Center for Biotechnology Information (NCBI) in the United States, which collects high-throughput gene expression data, chip data, sequencing data, and other information from around the world, providing a wealth of resources for biomedical research). After batch correction, differential analysis, Gene Ontology (GO) enrichment analysis, and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis were performed. (2) The most significant pathway from the results of the KEGG enrichment analysis was extracted as the exposure factor for the study. Data on tuberculosis and peri-implantitis (the study has been approved by the relevant institutional review board) were obtained from the Genome-Wide Association Study (GWAS) database (an open-access database developed by the MRC Integrative Epidemiology Unit at the University of Bristol, which integrates GWAS summary data from large cohorts such as UK Biobank and FinnGen, covering a wide range of human phenotypes and disease-related outcomes) as outcome factors for Mendelian randomization analysis. The inverse variance weighting method, MR-Egger regression method, weighted median method, simple mode, and weighted mode were used to evaluate the causal relationship between peri-implantitis and tuberculosis. Heterogeneity analysis, horizontal pleiotropy test, and leave-one-out sensitivity analysis were conducted to assess the reliability of the results of the Mendelian randomization analysis. (3) Immunocyte infiltration analysis was carried out to explore the correlation between tuberculosis pathway genes and immune cells. The differential expression of pathway genes was verified through differential analysis in the validation group.
RESULTS AND CONCLUSION: (1) GO enrichment analysis revealed that peri-implantitis was significantly associated with biological functions such as leukocyte-mediated immunity, lymphocyte-mediated immunity, regulation of monocyte proliferation, and phagocytosis. KEGG enrichment analysis revealed that peri-implantitis was primarily associated with tuberculosis, phagosomes, cytokine-cytokine receptor interactions, Staphylococcus aureus infection, alcoholic liver disease, and COVID-19. The most significant pathway obtained from the KEGG enrichment analysis was tuberculosis. (2) The results of the Mendelian randomization analysis showed that when tuberculosis was regarded as the exposure factor, there was a significant positive correlation between tuberculosis and peri-implantitis (inverse variance weighting: odds ratio=1.490, 95% confidence interval=1.218-1.823, P < 0.001). The results of the weighted median method were consistent with those of the inverse variance weighting method. The results of the heterogeneity analysis indicated no heterogeneity. The results of the horizontal pleiotropy test showed that there was no horizontal pleiotropy in this study. The results of the leave-one-out sensitivity analysis showed that removing any single nucleotide polymorphism individually would not affect the results of the Mendelian randomization. (3) Correlation analysis between immune cells showed that tuberculosis may increase the risk of peri-implantitis through immunosuppressive effects and promoting alveolar bone resorption. To conclusion, there is a causal association between tuberculosis and peri-implantitis, and tuberculosis may increase the risk of peri-implantitis. This study provides a new theoretical perspective for the prevention and treatment of diseases in the field of dental implantation, and is expected to promote the improvement of the risk assessment system for implant treatment in tuberculosis patients in clinical practice, and provide an important reference for reducing the incidence of peri-implantitis and optimizing treatment strategies.


Key words: peri-implantitis, tuberculosis, Mendelian randomization, bioinformatics, immune cells, dental implantation

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