Chinese Journal of Tissue Engineering Research ›› 2023, Vol. 27 ›› Issue (20): 3151-3157.doi: 10.12307/2023.484
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Li Yangjie1, Qi Rong2, Zhang Xinyu1, Cheng Jiaji3, Zhou Ning4, Cui Xue3, Cheng Shuang4, Wang Zhengdong5, Yan Nan6
Received:
2022-05-10
Accepted:
2022-08-05
Online:
2023-07-18
Published:
2022-11-19
Contact:
Yan Nan, MD, Associate professor, Department of Basic Rehabilitation, Medical Applied Technology School, Shenyang Medical College, Shenyang 110034, Liaoning Province, China
Wang Zhengdong, MD, Professor, Department of Anatomy, Basic Medical School, Shenyang Medical College, Shenyang 110034, Liaoning Province, China
About author:
Li Yangjie, Master candidate, Basic Medical School, Shenyang Medical College, Shenyang 110034, Liaoning Province, China
Supported by:
CLC Number:
Li Yangjie, Qi Rong, Zhang Xinyu, Cheng Jiaji, Zhou Ning, Cui Xue, Cheng Shuang, Wang Zhengdong, Yan Nan. Neuroprotective effects of sodium butyrate and acetylation proteomics analysis in fluorosis rats[J]. Chinese Journal of Tissue Engineering Research, 2023, 27(20): 3151-3157.
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2.6 乙酰化修饰蛋白GO功能富集分析 将上述52个蛋白导入Gene Ontology数据库,并进行功能富集分析,GO分析包括生物学过程(BP)、分子功能(MF)和细胞组分(CC)3个部分,选取P值最大的前10个进行柱状图绘制。在生物学过程中,乙酰化修饰蛋白富集较为均匀,包括宿主与病毒相互作用、宿主对共生过程的调节、细胞极性的建立或维持、神经递质运输、神经递质水平的调节、膜对接等生物学过程。在细胞组分中,乙酰化修饰蛋白显著富集于突触功能,包括神经元间突触、突触后密度、不对称突触、突触后膜特化、突触膜、细胞外囊泡、囊泡运输、突触囊泡、Schaffer侧支至海马CA1区突触传递。在分子功能中,乙酰化修饰蛋白显著富集于跨膜物质转运如离子跨膜转运蛋白活性及其磷酸化机制、钙通道调节活性、ATP酶偶联离子跨膜转运体活性、钠与钾跨膜转运蛋白活性及其磷酸化机制等,见图6。"
2.8 乙酰化修饰蛋白的互作网络分析 将上述52个蛋白导入STRING数据库绘制互作网络图,最低互动分数设置为0.4,隐藏图中断掉的节点,线条粗细表示数据支持的强弱,获得34个蛋白质节点,边数44的蛋白互作网络图,见图8。将蛋白互作数据导入Cytoscape软件,利用cytohubba插件的不同算法筛选排名前5的枢纽蛋白,见表1,将不同算法的枢纽蛋白出现次数排序,取出现次数最多的前5个为关键蛋白,分别为Hsp8、Rab7a、Nsf、Ezr、Cfl1,见图9。与对照组相比,这些蛋白在氟中毒大鼠脑皮质中并无乙酰化修饰,但经过丁酸钠治疗后,该蛋白出现乙酰化修饰的改变,或为氟神经毒性的致病因素以及丁酸钠潜在的治疗机制,为下一步分子生物学领域的验证奠定基础。"
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