Chinese Journal of Tissue Engineering Research ›› 2022, Vol. 26 ›› Issue (29): 4672-4679.doi: 10.12307/2022.883
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Yang Wei1, Han Qingmin2
Received:
2021-09-30
Accepted:
2021-12-11
Online:
2022-10-18
Published:
2022-03-28
Contact:
Han Qingmin, MD, Chief physician, Professor, Doctoral supervisor, The Third Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou 510405, Guangdong Province, China
About author:
Yang Wei, MD candidate, Attending physician, The Third Clinical Medical College of Guangzhou University of Chinese Medicine, Guangzhou 510405, Guangdong Province, China
Supported by:
CLC Number:
Yang Wei, Han Qingmin. Exploring peripheral blood biomarkers and therapeutic drugs for osteoarthritis based on bioinformatics[J]. Chinese Journal of Tissue Engineering Research, 2022, 26(29): 4672-4679.
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2.3 GO功能和KEGG通路富集分析 对筛选得到的共有差异表达基因进行GO和KEGG富集分析,共富集到193条,其中在满足P.adj< 0.05 & q value< 0.2条件下,BP共有61条,CC共有1条,MF共有2条,KEGG共有55条。BP主要富集在T细胞活化、白细胞迁移、白细胞-细胞黏附、细胞黏附的正调控和淋巴细胞活化的调节等条目;CC富集在细胞的核斑点;MF富集在血管内皮生长因子受体结合和磷酸酪氨酸残基结合;KEGG富集在MAPK信号通路、Rap1信号通路、Ras信号通路、B细胞受体信号通路和趋化因子信号通路等通路。在满足P.adjust< 0.05& Count≥5条件下,结合与骨关节炎的相关性展示BP和KEGG,分别有29条,表格仅展示前10条,具体见图5和表1。"
2.4 差异表达基因的PPI网络分析及Top基因 将筛选到的142个差异表达基因导入STRING在线平台,结果导入Cytoscape-v3.8.2中,得到PPI网络图,共有98个节点,184条互作关系,经MCODE筛选出4个集簇,展示得分较高的前3个集簇,具体见图6。然后使用cytohubba插件采用MNC、MCC和Degree算法筛选出连结度最高的前10个基因,再联合度(Degree)、中介中心性(Betweenness)和紧密度(Closeness)筛选Top10基因:MAPK1、VEGFA、GRB2、EGR1、RAC2、VAV1、NFKBIA、INPP5D、PTGS2和RAF1。见图7和表2。"
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