Chinese Journal of Tissue Engineering Research ›› 2024, Vol. 28 ›› Issue (27): 4346-4352.doi: 10.12307/2024.543
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Yang Jingyan1, Ma She1, Huang Renjun1, Yang Xiaoxia2, Tang Xiaochen2, Yu Dong2
Received:
2023-09-16
Accepted:
2023-11-01
Online:
2024-09-28
Published:
2024-01-27
Contact:
Yu Dong, MD, Chief physician, Master supervisor, The Third Clinical Hospital of Beijing University of Chinese Medicine, Beijing 100029, China
About author:
Yang Jingyan, Master candidate, The Third Clinical School of Beijing University of Chinese Medicine, Beijing 100029, China
Supported by:
CLC Number:
Yang Jingyan, Ma She, Huang Renjun, Yang Xiaoxia, Tang Xiaochen, Yu Dong. Yougui Pill in the treatment of lumbar disc herniation: network pharmacological analysis of active ingredients and potential targets[J]. Chinese Journal of Tissue Engineering Research, 2024, 28(27): 4346-4352.
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2.1 右归丸有效成分及作用靶点信息收集 通过TCMSP、TCMID平台检索符合标准的右归丸有效活性成分,剔除重复值后共138个。其中,当归有效成分6个,作用靶点52个;杜仲有效成分33个,作用靶点217个;附子有效成分8个,作用靶点33个;枸杞子有效成分50个,作用靶点200个;鹿角胶有效成分2个,作用靶点14个;肉桂有效成分12个,作用靶点67个;山药有效成分14个,作用靶点71个;山茱萸有效成分37个,作用靶点91个;熟地黄有效成分11个,作用靶点45个;菟丝子有效成分12个,作用靶点200个。将所获得的活性成分导入Uniprot数据库进行基因标准化,去除重复值共得到作用靶点基因308个。 2.2 腰椎间盘突出症靶点的收集 通过GenCards数据库共获得发病相关靶点585个,OMIM数据库获得发病相关靶点51个,剔除重复值后共收集得到腰椎间盘突出症潜在靶基因630个。 2.3 中药-疾病交集基因韦恩图 通过计算得到右归丸与腰椎间盘突出症的交集靶点共64个,右归丸可能通过这64个交集基因治疗腰椎间盘突出症,使用R包对结果绘图可视化,见图2。"
2.5 PPI网络分析 将得到交集基因信息导入在线数据库STRING,筛选minimum required interaction大于0.4的节点,去除无关联的单个节点,获得的剩余节点及关系导入Cytoscape 3.7.0软件绘制PPI网络,见图4。得到的网络图由64个节点和1 251条边组成;进一步按degree值进行筛选,根据“中药活性成分-交集靶点网络”网络与PPI网络中的关键作用靶点相互映射,推测右归丸的有效成分可能通过白细胞介素6(degree值59)、肿瘤坏死因子α(degree值58)、AKT1(degree值58)、白细胞介素1B(degree值58)、血管内皮生长因子A(degree值56)这5个核心靶点发挥改善腰椎间盘突出症的作用。"
2.7 动物实验验证结果 许多实验证实肿瘤坏死因子α是腰椎间盘突出症发生机制中重要的致炎因子,并且是神经根损伤过程中最重要的细胞因子,临床上可以借助外周血肿瘤坏死因子α水平检测作为椎间盘突出症病情变化、临床治疗以及预后判断的一种方法。故此次实验选取预测degree值排名第二的核心靶点肿瘤坏死因子α为代表进行初步验证[18]。实验结果显示,对照组、退变组、退变+右归丸组大鼠血清肿瘤坏死因子α质量浓度分别为(12.38±3.05),(52.65±1.51),(34.97±3.20) ng/L,组间两两比较差异有显著性意义(P < 0.05)。 苏木精-伊红染色显示,对照组大鼠椎间盘纤维环完整,排列整齐,髓核圆形且饱满,髓核细胞丰富,髓核组织和纤维环的边界清晰;退变组大鼠椎间盘纤维环、髓核结构遭到破坏,可见大量圆形的软骨细胞增生,髓核组织和纤维环界限不清,排列紊乱;退变+右归丸组大鼠椎间盘纤维环可见重建趋势,排列稍紊乱,胶原纤维断裂或波浪状排列,正常髓核细胞数量较退变组增多,见图6。这些实验结果表明,在右归丸干预下大鼠椎间盘退行性变模型中的肿瘤坏死因子α含量降低、炎症反应被抑制,退行性变得到改善,右归丸在动物体内对椎间盘退变具有保护作用。"
2.8 靶基因功能分析 通过对交集基因进行GO富集分析发现,在生物过程中(BP),主要涉及脂多糖反应(response to lipopolusaccharide)、化学应激反应(cellular response to chemical stress)、细胞来源分子反应(response to molecule of bacterial origin)、氧化应激反应(response to oxidative stress)等;在细胞组分(CC)中,主要涉及细胞膜筏(membrane raft)、细胞膜微区(membrane microdomain)、胶原容器(collagen-containing extracellular matrix)等;在分子功能(MF)中,主要涉及蛋白结合(protein binding)、酶结合(enzyme binding)、锌离子结合(zinc ion binding)、细胞因子活性(cytokine activity)、蛋白激酶结合(protein kinase binding),见图7。KEGG功能富集分析结果显示右归丸治疗腰椎间盘突出症主要涉及白细胞介素17、肿瘤坏死因子、PI3K-AKT等信号通路。"
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